DBToolkit: processing protein databases for peptide-centric proteomics
- Author
- Lennart Martens (UGent) , Joël Vandekerckhove (UGent) and Kris Gevaert (UGent)
- Organization
- Abstract
- DBToolkit is a user-friendly, easily extensible tool that allows the processing of protein sequence databases to peptide-centric sequence databases. This processing is primarily aimed at enhancing the useful information content of these databases for use as optimized search spaces for efficient identification of peptide fragmentation spectra obtained by mass spectrometry. In addition, DBToolkit can be used to reliably solve a range of other typical tasks in processing sequence databases.
- Keywords
- IDENTIFICATION, MASS-SPECTROMETRY
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Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-339284
- MLA
- Martens, Lennart, et al. “DBToolkit: Processing Protein Databases for Peptide-Centric Proteomics.” BIOINFORMATICS, vol. 21, no. 17, 2005, pp. 3584–85, doi:10.1093/bioinformatics/bti588.
- APA
- Martens, L., Vandekerckhove, J., & Gevaert, K. (2005). DBToolkit: processing protein databases for peptide-centric proteomics. BIOINFORMATICS, 21(17), 3584–3585. https://doi.org/10.1093/bioinformatics/bti588
- Chicago author-date
- Martens, Lennart, Joël Vandekerckhove, and Kris Gevaert. 2005. “DBToolkit: Processing Protein Databases for Peptide-Centric Proteomics.” BIOINFORMATICS 21 (17): 3584–85. https://doi.org/10.1093/bioinformatics/bti588.
- Chicago author-date (all authors)
- Martens, Lennart, Joël Vandekerckhove, and Kris Gevaert. 2005. “DBToolkit: Processing Protein Databases for Peptide-Centric Proteomics.” BIOINFORMATICS 21 (17): 3584–3585. doi:10.1093/bioinformatics/bti588.
- Vancouver
- 1.Martens L, Vandekerckhove J, Gevaert K. DBToolkit: processing protein databases for peptide-centric proteomics. BIOINFORMATICS. 2005;21(17):3584–5.
- IEEE
- [1]L. Martens, J. Vandekerckhove, and K. Gevaert, “DBToolkit: processing protein databases for peptide-centric proteomics,” BIOINFORMATICS, vol. 21, no. 17, pp. 3584–3585, 2005.
@article{339284,
abstract = {{DBToolkit is a user-friendly, easily extensible tool that allows the processing of protein sequence databases to peptide-centric sequence databases. This processing is primarily aimed at enhancing the useful information content of these databases for use as optimized search spaces for efficient identification of peptide fragmentation spectra obtained by mass spectrometry. In addition, DBToolkit can be used to reliably solve a range of other typical tasks in processing sequence databases.}},
author = {{Martens, Lennart and Vandekerckhove, Joël and Gevaert, Kris}},
issn = {{1367-4803}},
journal = {{BIOINFORMATICS}},
keywords = {{IDENTIFICATION,MASS-SPECTROMETRY}},
language = {{eng}},
number = {{17}},
pages = {{3584--3585}},
title = {{DBToolkit: processing protein databases for peptide-centric proteomics}},
url = {{http://doi.org/10.1093/bioinformatics/bti588}},
volume = {{21}},
year = {{2005}},
}
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