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Abstract:

Sequence variability of RPCS (repetitive PuvII Ctenomys sequence), the major satellite DNA of octodontid Ctenomys rodents, was analysed in species belonging to three groups of species representing the two patterns of karyotypic evolution in the genus: stable and dynamic karyotypes among closely related species. The studied species represent the overall range of RPCS copy number (2000-6.6 × 106 copies per haploid genome) in the genus. RPCS sequence was characterised by PCR amplification of the genomic consensus sequence and cloned monomers. Our results suggest that RPCS genomic consensus sequence variability correlates with RPCS copy number stability and karyotypic stastis, but not with high or low RPCS copy number values. In contrast, the RPCS gcs shows a mutational profile that is similar across all analysed species. Our data suggest that an RPCS ancestral library of variants was maintained through the cladogenesis of the genus. There is also evidence pointing to the simultaneous contribution of processes of concerted evolution that resulted in a reduced representation of some ancestral variants and their partial replacement for new ones. In addition, analysis of distribution of the variability along the monomer suggests that subsequences of the RPCS are subject to some degree of constraint, probably driven by the recent replicative activity of RPCS in species with high copy number. © 2007 Elsevier B.V. All rights reserved.

Registro:

Documento: Artículo
Título:Sequence evolution of the major satellite DNA of the genus Ctenomys (Octodontidae, Rodentia)
Autor:Ellingsen, A.; Slamovits, C.H.; Rossi, M.S.
Filiación:IFIBYNE, CONICET, Laboratorio de Fisiología y Biología Molecular, Pabellón II, EHA1428, Buenos Aires, Argentina
Palabras clave:Concerted evolution; Ctenomys; Satellite DNA; satellite DNA; animal tissue; article; cladogenesis; controlled study; correlation analysis; DNA sequence; gene amplification; gene number; gene replication; genetic stability; genome; karyotyping; molecular cloning; nonhuman; nucleotide sequence; polymerase chain reaction; priority journal; rodent; Amino Acid Sequence; Animals; Base Sequence; Deoxyribonucleases, Type II Site-Specific; DNA, Satellite; Evolution, Molecular; Gene Amplification; Gene Library; Molecular Sequence Data; Phylogeny; Rodentia; Sequence Homology; Ctenomys; Octodontidae; Rodentia
Año:2007
Volumen:392
Número:1-2
Página de inicio:283
Página de fin:290
DOI: http://dx.doi.org/10.1016/j.gene.2007.01.013
Título revista:Gene
Título revista abreviado:Gene
ISSN:03781119
CODEN:GENED
CAS:Deoxyribonucleases, Type II Site-Specific, EC 3.1.21.4; DNA, Satellite; endodeoxyribonuclease PvuII, EC 3.1.21.-
Registro:https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_03781119_v392_n1-2_p283_Ellingsen

Referencias:

  • Aladjem, M.I., Fanning, E., The replicon revisited: an old model learns new tricks in metazoan chromosomes (2004) EMBO Rep., 5, pp. 686-691
  • Arnason, U., Gretarsdottir, S., Widegren, B., Mysticete (baleen whale) relationships based upon the sequence of the common cetacean DNA satellite (1992) Mol. Biol. Evol., 9, pp. 1018-1028
  • Averbeck, K.T., Eickbush, T.H., Monitoring the mode and tempo of concerted evolution in the Drosophila melanogaster rDNA locus (2005) Genetics, 171, pp. 1837-1846
  • Bradley, R.D., Wichman, H.A., Rapidly evolving repetitive DNAs in a conservative genome: a test of factors that affect chromosomal evolution (1994) Chomosom. Res., 2, pp. 354-360
  • Bruvo, B., Pons, J., Ugarković, D., Juan, C., Petitpierre, E., Plohl, M., Evolution of low-copy number and major satellite DNA sequences coexisting in two Pimelia species-groups (Coleoptera) (2003) Gene, 312, pp. 85-94
  • Coghlan, A., Eichler, E.E., Oliver, S.G., Paterson, A.H., Stein, L., Chromosome evolution in eukaryotes: a multi-kingdom perspective (2005) Trends Genet., 21, pp. 673-682
  • Dover, G.A., Molecular drive (2002) Trends Genet., 18, pp. 587-589
  • Elder Jr., J.F., Turner, B.J., Concerted evolution of repetitive DNA sequences in eukaryotes (1995) Q. Rev. Biol., 70, pp. 297-320
  • Fry, K., Salser, W., Nucleotide sequences of HS-alpha satellite DNA from kangaroo rat Dipodomys ordii and characterization of similar sequences in other rodents (1977) Cell, 12, pp. 1069-1084
  • Hartmann, N., Scherthan, H., Characterization of ancestral chromosome fusion points in the Indian muntjac deer (2004) Chromosoma, 112, pp. 213-220
  • Kumar, S., Tamura, K., Nei, M., MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment (2004) Brief. Bioinform., 5, pp. 150-163
  • Luchetti, A., Marino, A., Scanabissi, F., Mantovani, B., Genomic dynamics of a low-copy-number satellite DNA family in Leptestheria dahalacensis (Crustacea, Branchiopoda, Conchostraca) (2004) Gene, 342, pp. 313-320
  • Meštrović, N., Plohl, M., Mravinac, B., Ugarković, D., Evolution of satellite DNAs from the genus Palorus - experimental evidence for the "library" hypothesis (1998) Mol. Biol. Evol., 15, pp. 1062-1068
  • Mravinac, B., Plohl, M., Ugarković, D., Conserved patterns in the evolution of Tribolium satellite DNAs (2004) Gene, 332, pp. 169-177
  • Mravinac, B., Plohl, M., Ugarković, D., Preservation and high sequence conservation of satellite DNAs suggest functional constraints (2005) J. Mol. Evol., 61, pp. 542-550
  • Nijman, I.J., Lenstra, J.A., Mutation and recombination in cattle satellite DNA: a feedback model for the evolution of satellite DNA repeats (2001) J. Mol. Evol., 52, pp. 361-371
  • Pesce, C.G., Rossi, M.S., Muro, A.F., Reig, O.A., Zorzópulos, J., Kornblihtt, A.R., Binding of nuclear factors to a satellite DNA of retroviral origin with marked differences in copy number among species of the rodent Ctenomys (1994) Nucleic Acids Res., 22, pp. 656-661
  • Picariello, O., Feliciello, I., Bellinello, R., Chinali, G., S1 satellite DNA as a taxonomic marker in brown frogs: molecular evidence that Rana graeca graeca and Rana graeca italica are different species (2002) Genome, 45, pp. 63-70
  • Posada, D., Crandall, K.A., MODELTEST: testing the model of DNA substitution (1998) Bioinformatics, 14, pp. 817-818
  • Raghuraman, M.K., Replication dynamics of the yeast genome (2001) Science, 294, pp. 115-121
  • Redi, C.A., Garagna, S., Zacharias, H., Zuccotti, M., Capanna, E., The other chromatin (2001) Chromosoma, 110, pp. 136-147
  • Reig, O.A., Karyotypic repatterning as a triggering factor in cases of explosive speciation (1989) Evolutionary Biology of Unstable Populations, pp. 246-289. , Fontdevila A. (Ed), Springer Verlag, Berlin, Germany
  • Reig, O.A., Busch, C., Ortells, M.O., Contreras, J.R., An overview of evolution, systematics, population biology, cytogenetics, molecular biology and speciation in Ctenomys (1990) Evolutionary Biology of Subterranean Rodents, pp. 71-96. , Nevo E., and Reig O.A. (Eds), Alan R. Liss, New York
  • Reig, O.A., Massarini, A.L., Ortells, M.O., Barros, M.A., Tiranti, S.I., Dyzenchauz, F.J., New karyotypes and C-banding patterns of the subterranean rodents of the genus Ctenomys (Caviomorpha, Octodontidae) (1992) Argent. Mamm., 56, pp. 603-623
  • Robles, F., de la Herrán, R., Ludwig, A., Ruiz Rejon, C., Ruiz Rejón, M., Garrido-Ramos, M.A., Evolution of ancient satellite DNAs in sturgeon genomes (2004) Gene, 338, pp. 133-142
  • Rossi, M.S., Reig, O.A., Zorzópulos, J., Evidence for rolling-circle replication in a major satellite DNA from the South American rodents of the genus Ctenomys (1990) Mol. Biol. Evol., 7, pp. 340-350
  • Rossi, M.S., Reig, O.A., Zorzópulos, J., A major satellite DNA from the South American rodents of the genus Ctenomys (1993) Z. Säugetierkd., 58, pp. 244-251
  • Rossi, M.S., Pesce, C.G., Reig, O.A., Kornblihtt, A.R., Zorzópulos, J., Retroviral-like features in the repetitive unit of the major satellite DNA from the South American rodents of the genus Ctenomys (1993) DNA Seq., 3, pp. 379-381
  • Rossi, M.S., Redi, C.A., Viale, G., Massarini, A.L., Capanna, E., Chromosomal distribution of the major satellite DNA of South American rodents of the genus Ctenomys (1995) Cytogenet. Cell Genet., 69, pp. 179-184
  • Rozas, J., Rozas, R., DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis (1999) Bioinformatics, 15, pp. 174-175
  • Slamovits, C.H., Cook, J.A., Lessa, E.P., Rossi, M.S., Recurrent amplifications and deletions of satellite DNA accompanied chromosomal diversification in South American tuco-tucos (genus Ctenomys, Rodentia: Octodontidae): a phylogenetic approach (2001) Mol. Biol. Evol., 18, pp. 1708-1719
  • Steinberg, E., Patton, K., Genetic structure and the geographic of speciation in subterranean rodents; opportunities and constrains for evolutionary diversification (2000) Life Underground: the Biology of Subterranean Rodents, pp. 301-331. , Lacey E., Patton J.L., and Cameron G. (Eds), University of Chicago Press, Chicago, U.S.A
  • Strachan, T., Webb, D., Dover, G.A., Transition stages of molecular drive in multiple-copy DNA families in Drosophila (1985) EMBO J., 4, pp. 1701-1708
  • Swofford, D.L., (1998) PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4 Sinauer Associates. Sunderland, Mass, USA
  • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., Higgins, D.G., The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools (1997) Nucleic Acids Res., 25, pp. 4876-4882
  • Ugarković, D., Plohl, M., Variation in satellite DNA profiles-causes and effects (2002) EMBO J., 21, pp. 5955-5959
  • Verzi, D.H., The dental evidence on the differentiation of the ctenomyine rodents (Caviomorpha, Octodontidae, Ctenomyidae) (1999) Acta Theriol., 44, pp. 263-282
  • Verzi, D.H., Morphological evolution patterns in Ctenomyinae (Rodentia, Octodontidae) (2002) J. Neotrop. Mammal., 9, pp. 309-328

Citas:

---------- APA ----------
Ellingsen, A., Slamovits, C.H. & Rossi, M.S. (2007) . Sequence evolution of the major satellite DNA of the genus Ctenomys (Octodontidae, Rodentia). Gene, 392(1-2), 283-290.
http://dx.doi.org/10.1016/j.gene.2007.01.013
---------- CHICAGO ----------
Ellingsen, A., Slamovits, C.H., Rossi, M.S. "Sequence evolution of the major satellite DNA of the genus Ctenomys (Octodontidae, Rodentia)" . Gene 392, no. 1-2 (2007) : 283-290.
http://dx.doi.org/10.1016/j.gene.2007.01.013
---------- MLA ----------
Ellingsen, A., Slamovits, C.H., Rossi, M.S. "Sequence evolution of the major satellite DNA of the genus Ctenomys (Octodontidae, Rodentia)" . Gene, vol. 392, no. 1-2, 2007, pp. 283-290.
http://dx.doi.org/10.1016/j.gene.2007.01.013
---------- VANCOUVER ----------
Ellingsen, A., Slamovits, C.H., Rossi, M.S. Sequence evolution of the major satellite DNA of the genus Ctenomys (Octodontidae, Rodentia). Gene. 2007;392(1-2):283-290.
http://dx.doi.org/10.1016/j.gene.2007.01.013