Registro:

Referencias:

• Dequeant, M.L., Pourquie, O., Segmental patterning of the vertebrate embryonic axis (2008) Nat Rev Genet, 9, pp. 370-382
• Holley, S.A., The genetics and embryology of zebrafish metamerism (2007) Dev Dyn, 236, pp. 1422-1449
• Oates, A.C., Morelli, L.G., Ares, S., Patterning embryos with oscillations: structure, function and dynamics of the vertebrate segmentation clock (2012) Development, 139, pp. 625-639
• Dequeant, M.L., Glynn, E., Gaudenz, K., Wahl, M., Chen, J., A complex oscillating network of signaling genes underlies the mouse segmentation clock (2006) Science, 314, pp. 1595-1598
• Krol, A.J., Roellig, D., Dequeant, M.L., Tassy, O., Glynn, E., Evolutionary plasticity of segmentation clock networks (2011) Development, 138, pp. 2783-2792
• Palmeirim, I., Henrique, D., Ish-Horowicz, D., Pourquie, O., Avian hairy gene expression identifies a molecular clock linked to vertebrate segmentation and somitogenesis (1997) Cell, 91, pp. 639-648
• Masamizu, Y., Ohtsuka, T., Takashima, Y., Nagahara, H., Takenaka, Y., Real-time imaging of the somite segmentation clock: revelation of unstable oscillators in the individual presomitic mesoderm cells (2006) Proc Natl Acad Sci U S A, 103, pp. 1313-1318
• Cinquin, O., Repressor dimerization in the zebrafish somitogenesis clock (2007) PLoS Comput Biol, 3, pp. e32. , doi:10.1371/journal.pcbi.0030032
• Uriu, K., Morishita, Y., Iwasa, Y., Random cell movement promotes synchronization of the segmentation clock (2010) Proc Natl Acad Sci U S A, 107, pp. 4979-4984
• Lewis, J., Autoinhibition with transcriptional delay: a simple mechanism for the zebrafish somitogenesis oscillator (2003) Curr Biol, 13, pp. 1398-1408
• Oates, A.C., Ho, R.K., Hairy/E(spl)-related (Her) genes are central components of the segmentation oscillator and display redundancy with the Delta/Notch signaling pathway in the formation of anterior segmental boundaries in the zebrafish (2002) Development, 129, pp. 2929-2946
• Henry, C.A., Urban, M.K., Dill, K.K., Merlie, J.P., Page, M.F., Two linked hairy/Enhancer of split-related zebrafish genes, her1 and her7, function together to refine alternating somite boundaries (2002) Development, 129, pp. 3693-3704
• Giudicelli, F., Ozbudak, E.M., Wright, G.J., Lewis, J., Setting the tempo in development: an investigation of the zebrafish somite clock mechanism (2007) PLoS Biol, 5, pp. e150. , doi:10.1371/journal.pbio.0050150
• Brend, T., Holley, S.A., Expression of the oscillating gene her1 is directly regulated by hairy/enhancer of split, T-box, and suppressor of hairless proteins in the zebrafish segmentation clock (2009) Dev Dyn, 238, pp. 2745-2759
• Cooke, J., Zeeman, E.C., A clock and wavefront model for control of the number of repeated structures during animal morphogenesis (1976) J Theor Biol, 58, pp. 455-476
• Gomez, C., Ozbudak, E.M., Wunderlich, J., Baumann, D., Lewis, J., Control of segment number in vertebrate embryos (2008) Nature, 454, pp. 335-339
• Schroter, C., Oates, A.C., Segment number and axial identity in a segmentation clock period mutant (2010) Curr Biol, 20, pp. 1254-1258
• Kawamura, A., Koshida, S., Hijikata, H., Sakaguchi, T., Kondoh, H., Zebrafish hairy/enhancer of split protein links FGF signaling to cyclic gene expression in the periodic segmentation of somites (2005) Genes Dev, 19, pp. 1156-1161
• Maerkl, S.J., Quake, S.R., A systems approach to measuring the binding energy landscapes of transcription factors (2007) Science, 315, pp. 233-237
• Gerber, D., Maerkl, S.J., Quake, S.R., An in vitro microfluidic approach to generating protein-interaction networks (2009) Nat Methods, 6, pp. 71-74
• Maerkl, S.J., Quake, S.R., Experimental determination of the evolvability of a transcription factor (2009) Proc Natl Acad Sci U S A, 106, pp. 18650-18655
• Spinner, D.S., Liu, S., Wang, S.W., Schmidt, J., Interaction of the myogenic determination factor myogenin with E12 and a DNA target: mechanism and kinetics (2002) J Mol Biol, 317, pp. 431-445
• Fordyce, P.M., Gerber, D., Tran, D., Zheng, J., Li, H., De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis (2010) Nat Biotechnol, 28, pp. 970-975
• Walhout, A.J., Vidal, M., High-throughput yeast two-hybrid assays for large-scale protein interaction mapping (2001) Methods, 24, pp. 297-306
• Deplancke, B., Dupuy, D., Vidal, M., Walhout, A.J., A gateway-compatible yeast one-hybrid system (2004) Genome Res, 14, pp. 2093-2101
• Trofka, A., Schwendinger-Schreck, J., Brend, T., Pontius, W., Emonet, T., The Her7 node modulates the network topology of the zebrafish segmentation clock via sequestration of the Hes6 hub (2012) Development, 139, pp. 940-947
• Holley, S.A., Julich, D., Rauch, G.J., Geisler, R., Nusslein-Volhard, C., her1 and the notch pathway function within the oscillator mechanism that regulates zebrafish somitogenesis (2002) Development, 129, pp. 1175-1183
• Wienholds, E., van Eeden, F., Kosters, M., Mudde, J., Plasterk, R.H., Efficient target-selected mutagenesis in zebrafish (2003) Genome Res, 13, pp. 2700-2707
• Julich, D., Hwee Lim, C., Round, J., Nicolaije, C., Schroeder, J., beamter/deltaC and the role of Notch ligands in the zebrafish somite segmentation, hindbrain neurogenesis and hypochord differentiation (2005) Dev Biol, 286, pp. 391-404
• Gajewski, M., Sieger, D., Alt, B., Leve, C., Hans, S., Anterior and posterior waves of cyclic her1 gene expression are differentially regulated in the presomitic mesoderm of zebrafish (2003) Development, 130, pp. 4269-4278
• Sieger, D., Ackermann, B., Winkler, C., Tautz, D., Gajewski, M., her1 and her13.2 are jointly required for somitic border specification along the entire axis of the fish embryo (2006) Dev Biol, 293, pp. 242-251
• Herrgen, L., Schroter, C., Bajard, L., Oates, A.C., Multiple embryo time-lapse imaging of zebrafish development (2009) Methods Mol Biol, 546, pp. 243-254
• Schroter, C., Herrgen, L., Cardona, A., Brouhard, G.J., Feldman, B., Dynamics of zebrafish somitogenesis (2008) Dev Dyn, 237, pp. 545-553
• Rubinow, S.I., Segel, L.A., Positive and negative cooperativity (1991) Biological Kinetics, pp. 29-44. , In: Segel L. A, editors, Cambridge, Cambridge University Press
• Zeiser, S., Liebscher, H.V., Tiedemann, H., Rubio-Aliaga, I., Przemeck, G.K., Number of active transcription factor binding sites is essential for the Hes7 oscillator (2006) Theor Biol Med Model, 3, p. 11
• Singh, J., Padgett, R.A., Rates of in situ transcription and splicing in large human genes (2009) Nat Struct Mol Biol, 16, pp. 1128-1133
• Sasai, Y., Kageyama, R., Tagawa, Y., Shigemoto, R., Nakanishi, S., Two mammalian helix-loop-helix factors structurally related to Drosophila hairy and Enhancer of split (1992) Genes Dev, 6, pp. 2620-2634
• Ohsako, S., Hyer, J., Panganiban, G., Oliver, I., Caudy, M., Hairy function as a DNA-binding helix-loop-helix repressor of Drosophila sensory organ formation (1994) Genes Dev, 8, pp. 2743-2755
• Hirata, H., Bessho, Y., Kokubu, H., Masamizu, Y., Yamada, S., Instability of Hes7 protein is crucial for the somite segmentation clock (2004) Nat Genet, 36, pp. 750-754
• Monk, N.A., Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays (2003) Curr Biol, 13, pp. 1409-1413
• Lingbeck, J.M., Trausch-Azar, J.S., Ciechanover, A., Schwartz, A.L., E12 and E47 modulate cellular localization and proteasome-mediated degradation of MyoD and Id1 (2005) Oncogene, 24, pp. 6376-6384
• Trausch-Azar, J.S., Lingbeck, J., Ciechanover, A., Schwartz, A.L., Ubiquitin-Proteasome-mediated degradation of Id1 is modulated by MyoD (2004) J Biol Chem, 279, pp. 32614-32619
• Zhang, F., Lu, J., Liu, Z., Chen, A., Shen, J., Effects of nonlinear degradation of protein on the oscillatory dynamics in a simple gene regulatory network (2010) Physica A, 389, pp. 1286-1295
• Buchler, N.E., Gerland, U., Hwa, T., Nonlinear protein degradation and the function of genetic circuits (2005) Proc Natl Acad Sci U S A, 102, pp. 9559-9564
• Buchler, N.E., Louis, M., Molecular titration and ultrasensitivity in regulatory networks (2008) J Mol Biol, 384, pp. 1106-1119
• Campanelli, M., Gedeon, T., Somitogenesis clock-wave initiation requires differential decay and multiple binding sites for clock protein (2010) PLoS Comput Biol, 6, pp. e1000728. , doi:10.1371/journal.pcbi.1000728
• Bae, S., Bessho, Y., Hojo, M., Kageyama, R., The bHLH gene Hes6, an inhibitor of Hes1, promotes neuronal differentiation (2000) Development, 127, pp. 2933-2943
• Massari, M.E., Murre, C., Helix-loop-helix proteins: regulators of transcription in eucaryotic organisms (2000) Mol Cell Biol, 20, pp. 429-440
• Fischer, A., Gessler, M., Delta-Notch-and then? Protein interactions and proposed modes of repression by Hes and Hey bHLH factors (2007) Nucleic Acids Res, 35, pp. 4583-4596
• Bessho, Y., Hirata, H., Masamizu, Y., Kageyama, R., Periodic repression by the bHLH factor Hes7 is an essential mechanism for the somite segmentation clock (2003) Genes Dev, 17, pp. 1451-1456
• Bessho, Y., Sakata, R., Komatsu, S., Shiota, K., Yamada, S., Dynamic expression and essential functions of Hes7 in somite segmentation (2001) Genes Dev, 15, pp. 2642-2647
• Ohtsuka, T., Ishibashi, M., Gradwohl, G., Nakanishi, S., Guillemot, F., Hes1 and Hes5 as notch effectors in mammalian neuronal differentiation (1999) The EMBO Journal, 18, pp. 2196-2207
• Leimeister, C., Dale, K., Fischer, A., Klamt, B., Hrabe de Angelis, M., Oscillating expression of c-Hey2 in the presomitic mesoderm suggests that the segmentation clock may use combinatorial signaling through multiple interacting bHLH factors (2000) Dev Biol, 227, pp. 91-103
• Bhattacharya, A., Baker, N.E., A network of broadly expressed HLH genes regulates tissue-specific cell fates (2011) Cell, 147, pp. 881-892
• Oster, H., Yasui, A., van der Horst, G.T., Albrecht, U., Disruption of mCry2 restores circadian rhythmicity in mPer2 mutant mice (2002) Genes Dev, 16, pp. 2633-2638
• Shankaran, S.S., Sieger, D., Schroter, C., Czepe, C., Pauly, M.C., Completing the set of h/E(spl) cyclic genes in zebrafish: her12 and her15 reveal novel modes of expression and contribute to the segmentation clock (2007) Dev Biol, 304, pp. 615-632
• Sieger, D., Tautz, D., Gajewski, M., her11 is involved in the somitogenesis clock in zebrafish (2004) Dev Genes Evol, 214, pp. 393-406
• Herrgen, L., Ares, S., Morelli, L.G., Schroter, C., Julicher, F., Intercellular coupling regulates the period of the segmentation clock (2010) Curr Biol
• Morelli, L.G., Ares, S., Herrgen, L., Schroter, C., Julicher, F., Delayed coupling theory of vertebrate segmentation (2009) HFSP J, 3, pp. 55-66
• Uriu, K., Morishita, Y., Iwasa, Y., Traveling wave formation in vertebrate segmentation (2009) J Theor Biol, 257, pp. 385-396
• Hester, S.D., Belmonte, J.M., Gens, J.S., Clendenon, S.G., Glazier, J.A., A multi-cell, multi-scale model of vertebrate segmentation and somite formation (2011) PLoS Comput Biol, 7, pp. e1002155. , doi:10.1371/journal.pcbi.1002155
• Santillan, M., Mackey, M.C., A proposed mechanism for the interaction of the segmentation clock and the determination front in somitogenesis (2008) PLoS One, 3, pp. e1561. , doi:10.1371/journal.pone.0001561
• Rodriguez-Gonzalez, J.G., Santillan, M., Fowler, A.C., Mackey, M.C., The segmentation clock in mice: interaction between the Wnt and Notch signalling pathways (2007) Journal of Theoretical Biology, 248, pp. 37-47
• Murray, P.J., Maini, P.K., Baker, R.E., The clock and wavefront model revisited (2011) Journal of Theoretical Biology, 283, pp. 227-238
• Tiedemann, H.B., Schneltzer, E., Zeiser, S., Rubio-Aliaga, I., Wurst, W., Cell-based simulation of dynamic expression patterns in the presomitic mesoderm (2007) Journal of Theoretical Biology, 248, pp. 120-129
• Novak, B., Tyson, J.J., Design principles of biochemical oscillators (2008) Nat Rev Mol Cell Biol, 9, pp. 981-991
• Zeiser, S., Muller, J., Liebscher, V., Modeling the Hes1 oscillator (2007) J Comput Biol, 14, pp. 984-1000
• Hens, K., Feuz, J., Isakova, A., Iagovitina, A., Massouras, A., Automated protein-DNA interaction screening of Drosophila regulatory elements (2011) Nat Methods in Press
• Thorsen, T., Maerkl, S.J., Quake, S.R., Microfluidic large-scale integration (2002) Science, 298, pp. 580-584
• Muller, M., Weizsacker, E., Campos-Ortega, J.A., Expression domains of a zebrafish homologue of the Drosophila pair-rule gene hairy correspond to primordia of alternating somites (1996) Development, 122, pp. 2071-2078
• Deniziak, M., Thisse, C., Rederstorff, M., Hindelang, C., Thisse, B., Loss of selenoprotein N function causes disruption of muscle architecture in the zebrafish embryo (2007) Exp Cell Res, 313, pp. 156-167
• Weinberg, E.S., Allende, M.L., Kelly, C.S., Abdelhamid, A., Murakami, T., Developmental regulation of zebrafish MyoD in wild-type, no tail and spadetail embryos (1996) Development, 122, pp. 271-280
• Prince, V.E., Joly, L., Ekker, M., Ho, R.K., Zebrafish hox genes: genomic organization and modified colinear expression patterns in the trunk (1998) Development, 125, pp. 407-420
• Riedel-Kruse, I.H., Muller, C., Oates, A.C., Synchrony dynamics during initiation, failure, and rescue of the segmentation clock (2007) Science, 317, pp. 1911-1915
• Oates, A.C., Mueller, C., Ho, R.K., Cooperative function of deltaC and her7 in anterior segment formation (2005) Dev Biol, 280, pp. 133-149

Citas:

---------- APA ----------

---------- CHICAGO ----------

---------- MLA ----------

---------- VANCOUVER ----------