LinkProt : a database collecting information about biological links
Authors:
- Paweł Dąbrowski-Tumański,
- Aleksandra I Jarmolińska,
- Wanda Helena Niemyska,
- Eric J Rawdon,
- Kenneth C Millett,
- Joanna I Sułkowska
Abstract
Protein chains are known to fold into topologically complex shapes, such as knots, slipknots or complex lassos. This complex topology of the chain can be considered as an additional feature of a protein, separate from secondary and tertiary structures. Moreover, the complex topology can be defined also as one additional structural level. The LinkProt database (http://linkprot.cent.uw.edu.pl) collects and displays information about protein links - topologically non-trivial structures made by up to four chains and complexes of chains (e.g. in capsids). The database presents deterministic links (with loops closed, e.g. by two disulfide bonds), links formed probabilistically and macromolecular links. The structures are classified according to their topology and presented using the minimal surface area method. The database is also equipped with basic tools which allow users to analyze the topology of arbitrary (bio)polymers.
- Record ID
- USLc11c7aedcb4c48c387e22aef4f1ffbbe
- Author
- Journal series
- Nucleic Acids Research, ISSN 0305-1048, e-ISSN 1362-4962
- Issue year
- 2017
- Vol
- 45
- Pages
- 243-249
- Publication size in sheets
- 0.30
- Keywords in English
- Biopolymers; Computational Biology; Databases, Protein; Software; Structure-Activity Relationship; Web Browser
- DOI
- DOI:10.1093/nar/gkw976 Opening in a new tab
- Handle.net URL
- hdl.handle.net/20.500.12128/3965 Opening in a new tab
- URL
- https://academic.oup.com/nar/article/45/D1/D243/2333928 Opening in a new tab
- Language
- eng (en) English
- File
-
- File: 1
- LinkProt : a database collecting information about biological links, File Dabrowski_Tumanski_LinkProt.pdf / 1 MB
- Dabrowski_Tumanski_LinkProt.pdf
- publication date: 06-02-2024
- LinkProt : a database collecting information about biological links, File Dabrowski_Tumanski_LinkProt.pdf / 1 MB
-
- Score (nominal)
- 40
- Score source
- BIBLIOGRAFIA DOROBKU PRACOWNIKÓW UŚ
- Publication indicators
- = 23
- PubMed ID
- 27794552 Opening in a new tab
- Uniform Resource Identifier
- https://opus.us.edu.pl/info/article/USLc11c7aedcb4c48c387e22aef4f1ffbbe/
- URN
urn:uni-kat-prod:USLc11c7aedcb4c48c387e22aef4f1ffbbe
* presented citation count is obtained through Internet information analysis, and it is close to the number calculated by the Publish or PerishOpening in a new tab system.