User menu

Accès à distance ? S'identifier sur le proxy UCLouvain

Design and validation of a low density array (Nosochip) for the detection and identification of the main pathogenic bacteria and fungi responsible for nosocomial pneumonia.

  1. Anthony RM, Brown TJ, French GL (2000) Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonucleotide array. J Clin Microbiol 38:781–788
  2. Buck GE, O’Hara LC, Summersgill JT (1992) Rapid, sensitive detection of Mycoplasma pneumoniae in simulated clinical specimens by DNA amplification. J Clin Microbiol 30:3280–3283
  3. Conrads Georg, Citron Diane M, Merriam Vreni, Tyrrell Kerin L, Goldstein Ellie J C, Claros Marina C, 16S-23S rDNA internal transcribed spacer sequences for analysis of the phylogenetic relationships among species of the genus Fusobacterium., 10.1099/00207713-52-2-493
  4. Cukras AR, Southworth DR, Brunelle JL, Culver GM, Green R (2003) Ribosomal proteins S12 and S13 function as control elements for translocation of the mRNA:tRNA complex. Mol Cell 12:321–328
  5. Dagan R, Shriker O, Hazan I, Leibovitz E, Greenberg D, Schlaeffer F, Levy R (1998) Prospective study to determine clinical relevance of detection of pneumococcal DNA in sera of children by PCR. J Clin Microbiol 36:669–673
  6. Espy M (2006) Real-time PCR in clinical microbiology: applications for routine laboratory testing. Clin Microbiol Rev 19:165–256
  7. Folgueira L, Delgado R, Palenque E, Aguado JM, Noriega AR (1996) Rapid diagnosis of Mycobacterium tuberculosis bacteremia by PCR. J Clin Microbiol 34:512–515
  8. Folgueira L, Delgado R, Palenque E, Noriega AR (1993) Detection of Mycobacterium tuberculosis DNA in clinical samples by using a simple lysis method and polymerase chain reaction. J Clin Microbiol 31:1019–1021
  9. Fukushima M, Kakinuma K, Hayashi H, Nagai H, Ito K, Kawaguchi R (2003) Detection and identification of Mycobacterium species isolates by DNA microarray. J Clin Microbiol 41:2605–2615
  10. Fukushima M, Kakinuma, K, Kawaguchi R (2002) Phylogenetic analysis of Salmonella, Shigella, and Escherichia coli strains on the basis of the gyrB gene sequence. J Clin Microbiol 40:2779–2785
  11. Gonzalez N, Romero J, Espejo RT (2003) Comprehensive detection of bacterial populations by PCR amplification of the 16S–23S rRNA spacer region. J Microbiol Methods 55:91–97
  12. Hamels S, Gala JL, Dufour S, Vannuffel P, Zammatteo N, Remacle J (2001) Consensus PCR and microarray for diagnosis of the genus Staphylococcus, species, and methicillin resistance. Biotechniques 31:1364–1366, 1368, 1370–1372
  13. Jonas D, Speck M, Daschner FD, Grundmann H (2002) Rapid PCR-based identification of methicillin-resistant Staphylococcus aureus from screening swabs. J Clin Microbiol 40:1821–1823
  14. Ke D, Picard FJ, Martineau F, Menard C, Roy PH, Ouellette M, Bergeron MG (1999) Development of a PCR assay for rapid detection of enterococci. J Clin Microbiol 37:3497–3503
  15. Keramas G, Bang DD, Lund M, Madsen M, Bunkenborg H, Telleman P, Christensen CB (2004) Use of culture, PCR analysis, and DNA microarrays for detection of Campylobacter jejuni and Campylobacter coli from chicken feces. J Clin Microbiol 42:3985–3991
  16. Kotilainen P, Jalava J, Meurman O, Lehtonen OP, Rintala E, Seppala OP, Eerola E, Nikkari S (1998) Diagnosis of meningococcal meningitis by broad-range bacterial PCR with cerebrospinal fluid. J Clin Microbiol 36:2205–2209
  17. Leinberger DM, Schumacher U, Autenrieth IB, Bachmann TT (2005) Development of a DNA microarray for detection and identification of fungal pathogens involved in invasive mycoses. J Clin Microbiol 43:4943–4953
  18. Mitterer G, Huber M, Leidinger E, Kirisits C, Lubitz W, Mueller MW, Schmidt WM (2004) Microarray-based identification of bacteria in clinical samples by solid-phase PCR amplification of 23S ribosomal DNA sequences. J Clin Microbiol 42:1048–1057
  19. Pao CC, Yen TS, You JB, Maa JS, Fiss EH, Chang CH (1990) Detection and identification of Mycobacterium tuberculosis by DNA amplification. J Clin Microbiol 28:1877–1880
  20. Peplies J, Glockner FO, Amann R (2003) Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes. Appl Environ Microbiol 69:1397–1407
  21. Rantakokko-Jalava K, Nikkari S, Jalava J, Eerola E, Skurnik M, Meurman O, Ruuskanen O, Alanen A, Kotilainen E, Toivanen P, Kotilainen P (2000) Direct amplification of rRNA genes in diagnosis of bacterial infections. J Clin Microbiol 38:32–39
  22. Reece RJ, Maxwell A (1991) DNA gyrase: structure and function. Crit Rev Biochem Mol Biol 26:335–375
  23. Robert F, Brakier-Gingras L (2003) A functional interaction between ribosomal proteins S7 and S11 within the bacterial ribosome. J Biol Chem 278:44913–44920
  24. Roth SB, Jalava J, Ruuskanen O, Ruohola A, Nikkari S (2004) Use of an oligonucleotide array for laboratory diagnosis of bacteria responsible for acute upper respiratory infections. J Clin Microbiol 42:4268–4274
  25. Sambrook J, Gething MJ (1989) Protein structure. Chaperones, paperones. Nature 342:224–225
  26. Song KP, Chan, TK, Ji ZL, Wong SW (2000) Rapid identification of Pseudomonas aeruginosa from ocular isolates by PCR using exotoxin A-specific primers. Mol Cell Probes 14:199–204
  27. Takewaki S, Okuzumi K, Ishiko H, Nakahara K, Ohkubo A, Nagai R (1993) Genus-specific polymerase chain reaction for the mycobacterial dnaJ gene and species-specific oligonucleotide probes. J Clin Microbiol 31:446–450
  28. Wang RF, Beggs ML, Robertson LH, Cerniglia CE (2002) Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples. FEMS Microbiol Lett 213:175–182
  29. Zammatteo N, Jeanmart L, Hamels S, Courtois S, Louette P, Hevesi L, Remacle J (2000) Comparison between different strategies of covalent attachment of DNA to glass surfaces to build DNA microarrays. Anal Biochem 280:143–150
Bibliographic reference Burteau, S ; Bogaerts, Pierre ; de Mendonça, R ; Irenge, L ; Berhin, C ; et. al. Design and validation of a low density array (Nosochip) for the detection and identification of the main pathogenic bacteria and fungi responsible for nosocomial pneumonia.. In: European Journal of Clinical Microbiology & Infectious Diseases : an international journal on pathogenesis, diagnosis, epidemiology, therapy, and prevention of infectious diseases, Vol. 27, no.1, p. 17-27 (2008)
Permanent URL http://hdl.handle.net/2078.1/124366