GPU Solutions to Multi-scale Problems in Science and Engineering

1. Front Matter

   Pages i-xiii

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2. Introductory Material

   1. Front Matter

      Pages 1-1

      PDF

   2. Why Do Scientists and Engineers Need GPU’s Today?

      • Matthew G. Knepley, David A. Yuen

      Pages 3-11

   3. Happenings at the GPU Conference

      • Xian-yu Lang, Long Wang, David A. Yuen

      Pages 13-30

3. Hardware and Installations

   1. Front Matter

      Pages 31-31

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   2. Efficiency, Energy Efficiency and Programming of Accelerated HPC Servers: Highlights of PRACE Studies

      • Lennart Johnsson

      Pages 33-78

   3. GRAPE and GRAPE-DR

      • Junichiro Makino

      Pages 79-87

4. Software Libraries

   1. Front Matter

      Pages 89-89

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5. Software libraries

   1. Parray: A Unifying Array Representation for Heterogeneous Parallelism

      • Yifeng Chen, Xiang Cui, Hong Mei

      Pages 91-113

   2. Practical Random Linear Network Coding on GPUs

      • Xiaowen Chu, Kaiyong Zhao

      Pages 115-130

   3. Preliminary Implementation of PETSc Using GPUs

      • Victor Minden, Barry Smith, Matthew G. Knepley

      Pages 131-140

6. Industrial Applications

   1. Front Matter

      Pages 141-141

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   2. Multi-scale Continuum-Particle Simulation on CPU–GPU Hybrid Supercomputer

      • Wei Ge, Ji Xu, Qingang Xiong, Xiaowei Wang, Feiguo Chen, Limin Wang et al.

      Pages 143-161

   3. GPU Best Practices for HPC Applications at Industry Scale

      • Peng Wang, Stan Posey

      Pages 163-172

   4. Simulation of 1D Condensing Flows with CESE Method on GPU Cluster

      • Wei Ran, Wan Cheng, Fenghua Qin, Xisheng Luo

      Pages 173-185

   5. Two-Way Coupled Sprays and Liquid Surface: A GPU-Based Multi-Scale Fluid Animation Method

      • Guijuan Zhang, Gaojin Wen, Shengzhong Feng

      Pages 187-199

   6. High Performance Implementation of Binomial Option Pricing Using CUDA

      • Yechen Gui, Shenzhong Feng, Gaojin Wen, Guijuan Zhang, Yanyi Wan, Tao Liu

      Pages 201-214

   7. Research of Acceleration MS-Alignment Identifying Post-Translational Modifications on GPU

      • Zhai Yantang, Tu Qiang, Lang Xianyu, Lu Zhonghua, Chi Xuebin

      Pages 215-232

7. Chemical Physical Applications

   1. Front Matter

      Pages 233-233

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   2. GPU Tuning for First-Principle Electronic Structure Simulations

      • Yue Wu, Weile Jia, Lin-Wang Wang, Weiguo Gao, Long Wang, Xuebin Chi

      Pages 235-246

This book covers the new topic of GPU computing with many applications involved, taken from diverse fields such as networking, seismology, fluid mechanics, nano-materials, data-mining , earthquakes ,mantle convection, visualization. It will show the public why GPU computing is important and easy to use. It will offer a reason why GPU computing is useful and how to implement codes in an everyday situation.

• GPU
• computational fluid dynamics
• interactive visualization
• large-scale numerical simulations
• massively parallel approach

• University of Minnesota, Dep. of Earth Sciences and Minnesota, Supercomputing Institute, Minneapolis, USA

  David A. Yuen

• Network Information Center, Comuter Center and Computer, Beijing, China, People's Republic

  Long Wang

• Supercomputing Center, Beijing, China, People's Republic

  Xuebin Chi

• , Computer Science, University of Houston, Houston, USA

  Lennart Johnsson

• Inst. Process Engineering (IPE), Chinese Academy of Sciences, Beijing, China, People's Republic

  Wei Ge

• , Laboratory of Computational Geodynamics,, Chinese Academy of Sciences, Beijing, China, People's Republic

  Yaolin Shi

Policies and ethics