Authors
R.T. Dame
J. van Mameren
M.S. Luijsterburg
M.E. Mysiak
A. Janićijević
G. Pazdzior
P.C. van der Vliet
C. Wyman
G.J.L. Wuite
Date (dd-mm-yyyy)
2005
Title
Analysis of scanning force microscopy images of protein-induced DNA bending using simulations
Journal
Nucleic Acids Research
Volume
33
Publication Year
2005
Issue number
7
Document type
Article
Abstract
Bending of DNA is a feature essential to the function of many DNA-binding proteins. Bending angles can be estimated with a variety of techniques, but most directly from images obtained using scanning force microscopy (SFM). Direct measurement of the bending angle using a tangent method often produces angles that deviate significantly from values obtained using other techniques. Here, we describe the application of SFM in combination with simulations of DNA as a means to estimate protein-induced bending angles in a reliable and unbiased fashion. In this manner, we were able to obtain accurate estimates for the bending angles induced by nuclear factor I, octamer-binding transcription factor 1, the human XPC-Rad23B complex.
URL
go to publisher's site
Permalink
https://hdl.handle.net/11245/1.349756