Temporal changes in the gene expression heterogeneity during brain development and aging

2020-03-01
Isildak, Ulas
Somel, Mehmet
Thornton, Janet M.
Donertas, Handan Melike
Cells in largely non-mitotic tissues such as the brain are prone to stochastic (epi-)genetic alterations that may cause increased variability between cells and individuals over time. Although increased interindividual heterogeneity in gene expression was previously reported, whether this process starts during development or if it is restricted to the aging period has not yet been studied. The regulatory dynamics and functional significance of putative aging-related heterogeneity are also unknown. Here we address these by a meta-analysis of 19 transcriptome datasets from three independent studies, covering diverse human brain regions. We observed a significant increase in inter-individual heterogeneity during aging (20 + years) compared to postnatal development (0 to 20 years). Increased heterogeneity during aging was consistent among different brain regions at the gene level and associated with lifespan regulation and neuronal functions. Overall, our results show that increased expression heterogeneity is a characteristic of aging human brain, and may influence aging-related changes in brain functions.
SCIENTIFIC REPORTS

Suggestions

Optical and mechanical properties of fiber-reinforced ceramic matrix optically transparent composites
Dericioğlu, Arcan Fehmi (2001-12-01)
The idea of increasing the fracture resistance of optically transparent Ceramics by incorporation of continuous fibers with a small expense in their light transmission was applied to a SiC (SCS-6) fiber-reinforced magnesium aluminate spinel matrix composite. It was found that although there is a slight decrease in the light transmittance of the transparent monolithic matrix with increasing fiber volume fraction, a fail-safe mechanism appeared in the composite by the bridging effect of the intact fibers
An embryonic poly(A)-binding protein (ePAB) is expressed in mouse oocytes and early preimplantation embryos.
Seli, E; Lalioti, MD; Flaherty, SM; Sakkas, D; Terzi Çizmecioğlu, Nihal; Steitz, JA (Proceedings of the National Academy of Sciences, 2005-01-11)
Gene expression during oocyte maturation, fertilization, and early embryo development until zygotic gene activation is regulated mainly by translational activation of maternally derived mRNAs. This process requires the presence of a poly(A)-binding protein. However, the cytoplasmic somatic cell poly(A)-binding protein (PABP1) is not expressed until later in embryogenesis. We recently identified an embryonic poly(A)-binding protein (ePAB) in Xenopus. ePAB is the predominant cytoplasmic PABP in Xenopus oocyte...
Atmospheric iridium at the South Pole as a measure of the meteoritic component
Tuncel, Süleyman Gürdal (Springer Science and Business Media LLC, 1987-10)
The measurement of iridium (Ir) in atmospheric samples is important because it gives information on the short-term flux of extraterrestrial material without interference from fragmentation products from large bodies. Such information cannot be obtained from sediment samples, because sediment samples integrate over millions of years and include contributions of large bodies impacted in that time period. In addition to flux information, through the analysis of Ir in atmospheric samples we can also evaluate a ...
Actin stabilizing compounds show specific biological effects due to their binding mode
Wang, Shuaijun; Crevenna, Alvaro H.; Ugur, Ilke; Marıon, Antoıne; Antes, Iris; Kazmaier, Uli; Hoyer, Maria; Lamb, Don C.; Gegenfurtner, Florian; Kliesmetes, Zane; Ziegenhain, Christoph; Enard, Wolfgang; Vollmar, Angelika; Zahler, Stefan (Springer Science and Business Media LLC, 2019-07-05)
Actin binding compounds are widely used tools in cell biology. We compare the biological and biochemical effects of miuraenamide A and jasplakinolide, a structurally related prototypic actin stabilizer. Though both compounds have similar effects on cytoskeletal morphology and proliferation, they affect migration and transcription in a distinctive manner, as shown by a transcriptome approach in endothelial cells. In vitro, miuraenamide A acts as an actin nucleating, F-actin polymerizing and stabilizing compo...
Numerical and Experimental Investigation into LWIR Transmission Performance of Complementary Silicon Subwavelength Antireflection Grating (SWARG) Structures
Cetin, Ramazan; Akın, Tayfun (Springer Science and Business Media LLC, 2019-03-18)
This paper presents a detailed comparison between the long wave infrared (LWIR) transmission performances of binary, silicon based, structurally complementary pillar and groove type antireflective gratings that can be used for wafer level vacuum packaging (WLVP) of uncooled microbolometer detectors. Both pillar and groove type gratings are designed with various topological configurations changing in various period sizes (Delta) from 1.0 mu m to 2.0 mu m, various heights/depths (h) from 0.8 mu m to 1.8 mu m,...
Citation Formats
U. Isildak, M. Somel, J. M. Thornton, and H. M. Donertas, “Temporal changes in the gene expression heterogeneity during brain development and aging,” SCIENTIFIC REPORTS, pp. 0–0, 2020, Accessed: 00, 2020. [Online]. Available: https://hdl.handle.net/11511/40482.