Article (Scientific journals)
The Pedological Context Modulates the Response of Soil Microbial Communities to Agroecological Management
Degrune, Florine; Boeraeve, Fanny; Dufrêne, Marc et al.
2019In Frontiers in Ecology and Evolution, 7 (261), p. 1-16
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Keywords :
sustainable agriculture; soil microbial diversity; bacteria; fungi; metabarcoding; 16S rRNA genes; internal transcribed spacers; soil texture
Abstract :
[en] Conservation agriculture is based on harnessing and optimizing natural ecological processes such as thosemediated by the soilmicrobiota and represents a very promising approach to overcome the limitations of current conventional practices. Agronomic conservation strategies such as increasing plant diversity at field scale and minimizing soil disturbances such as tillage aim at fostering the presence of beneficial microbial communities to support intrinsic agroecosystem functions and reduce the reliance on agrochemicals andmechanical soilmanagement. However, it remains poorly understood how these positive contributions are modulated by the pedological context. Moreover, only few studies have assessed the management-dependent responses of microbial communities in real-life farming systems. Here, in close association with the farmers and under realistic field conditions, we explored the response of bacterial and fungal community structure to conventional and conservation (using agroecological principles) management regimes across two pedological sites (loamy sand and sandy loam) in Belgium. Microbial diversity was assessed using a DNA metabarcoding approach of ribosomal markers with the Illumina MiSeq sequencing technology. Our results show that different management approaches select for distinct soil microbial communities and that these management-related effects were modulated by the pedological context. Therefore, designing new agricultural systems to foster the presence of beneficial organisms and reduce the level of pathogenic organisms should account for variability in the underlying pedological context.
Disciplines :
Agriculture & agronomy
Author, co-author :
Degrune, Florine
Boeraeve, Fanny ;  Université de Liège - ULiège > Ingénierie des biosystèmes (Biose) > Biodiversité et Paysage
Dufrêne, Marc  ;  Université de Liège - ULiège > Ingénierie des biosystèmes (Biose) > Biodiversité et Paysage
Cornelis, Jean-Thomas ;  Université de Liège - ULiège > Ingénierie des biosystèmes (Biose) > Echanges Eau-Sol-Plantes
Beat, Frey
Hartmann, Martin
Language :
English
Title :
The Pedological Context Modulates the Response of Soil Microbial Communities to Agroecological Management
Publication date :
12 July 2019
Journal title :
Frontiers in Ecology and Evolution
eISSN :
2296-701X
Publisher :
Frontiers Media S.A., Switzerland
Volume :
7
Issue :
261
Pages :
1-16
Peer reviewed :
Peer Reviewed verified by ORBi
Available on ORBi :
since 13 October 2019

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