LC-MS/MS; immunocapture; mass spectrometry; Biochemistry (medical); Clinical Biochemistry; General Medicine
Abstract :
[en] Immunocapture is now a well-established method for sample preparation prior to quantitation of peptides and proteins in complex matrices. This short review will give an overview of some clinical applications of immunocapture methods, as well as protocols with and without enzymatic digestion in a clinical context. The advantages and limitations of both approaches are discussed in detail. Challenges related to the choice of mass spectrometer are also discussed. Top-down, middle-down, and bottom-up approaches are discussed. Even though immunocapture has its limitations, its main advantage is that it provides an additional dimension of separation and/or isolation when working with peptides and proteins. Overall, this short review demonstrates the potential of such techniques in the field of proteomics-based clinical medicine and paves the way for better personalized medicine.
Disciplines :
Laboratory medicine & medical technology
Author, co-author :
Massonnet, Philippe ; Centre Hospitalier Universitaire de Liège - CHU > > Service de chimie clinique
Grifnee, Elodie ; Centre Hospitalier Universitaire de Liège - CHU > > Service de chimie clinique
Farre Segura, Jordi ; Université de Liège - ULiège > Département de pharmacie > Chimie médicale
Demeuse, Justine ; Université de Liège - ULiège > Département de pharmacie > Chimie médicale
Huyghebaert, Loreen ; Centre Hospitalier Universitaire de Liège - CHU > > Service de chimie clinique
Dubrowski, Thomas ; Centre Hospitalier Universitaire de Liège - CHU > > Service de chimie clinique
Dufour, Patrice ; Centre Hospitalier Universitaire de Liège - CHU > > Pool assistant - biologie clinique
Schoumacher, Matthieu ; Université de Liège - ULiège > Unités de recherche interfacultaires > Centre Interdisciplinaire de Recherche sur le Médicament (CIRM)
Peeters, Stéphanie ; Centre Hospitalier Universitaire de Liège - CHU > > Service de chimie clinique
Le Goff, Caroline ; Centre Hospitalier Universitaire de Liège - CHU > > Service de chimie clinique
Cavalier, Etienne ; Centre Hospitalier Universitaire de Liège - CHU > > Service de chimie clinique
Language :
English
Title :
Concise review on the combined use of immunocapture, mass spectrometry and liquid chromatography for clinical applications.
Rosenfeld L, Four centuries of clinical chemistry London, UK Routledge 2018
Antonelli G, Ceccato F, Artusi C, Marinova M, Plebani M, Salivary cortisol and cortisone by LC-MS/MS: validation, reference intervals and diagnostic accuracy in cushing's syndrome Clin Chim Acta 2015 451 247 51 https://doi.org/10.1016/j.cca.2015.10.004
Jones G, Kaufmann M, Vitamin D metabolite profiling using liquid chromatography-tandem mass spectrometry (LC-MS/MS) J Steroid Biochem Mol Biol 2016 164 110 4 https://doi.org/10.1016/j.jsbmb.2015.09.026
Yu S, Wang D, Ma X, Zhang Y, Sun D, Zou Y, Analytical and clinical performance of a liquid chromatography-tandem mass spectrometry method for measuring gastrin subtypes G34 and G17 in serum Clin Chem 2021 67 1220 9 https://doi.org/10.1093/clinchem/hvab097
Grebe SKG, Singh RJ, LC-MS/MS in the clinical laboratory-where to from here? Clin Biochem Rev 2011 32 5 31
Le Goff C, Farre-Segura J, Stojkovic V, Dufour P, Peeters S, Courtois J, The pathway through LC-MS method development: in-house or ready-to-use kit-based methods? Clin Chem Lab Med 2020 1002 9 https://doi.org/10.1515/cclm-2019-0916
Kellie JF, Tran JC, Jian W, Jones B, Mehl JT, Ge Y, Intact protein mass spectrometry for therapeutic protein quantitation, pharmacokinetics, and biotransformation in preclinical and clinical studies: an industry perspective J Am Soc Mass Spectrom 2021 32 1886 900 https://doi.org/10.1021/jasms.0c00270
Plouffe BD, Murthy SK, Lewis LH, Fundamentals and application of magnetic particles in cell isolation and enrichment: a review Rep Prog Phys 2015 78 016601 https://doi.org/10.1088/0034-4885/78/1/016601
He J, Huang M, Wang D, Zhang Z, Li G, Magnetic separation techniques in sample preparation for biological analysis: a review J Pharm Biomed Anal 2014 101 84 101 https://doi.org/10.1016/j.jpba.2014.04.017
Safarik I, Safarikova M, Magnetic techniques for the isolation and purification of proteins and peptides Biomagn Res Technol 2004 2 1 17 https://doi.org/10.1186/1477-044X-2-7
Pohanka M, Biosensors and bioanalytical devices based on magnetic particles: a review Curr Med Chem 2021 28 2828 41 https://doi.org/10.2174/0929867327666200730213721
Halvorsen TG, Reubsaet L, Antibody based affinity capture LC-MS/MS in quantitative determination of proteins in biological matrices TrAC Trends Anal Chem 2017 95 132 9 https://doi.org/10.1016/j.trac.2017.08.009
Fung EN, Bryan P, Kozhich A, Techniques for quantitative LC-MS/MS analysis of protein therapeutics: advances in enzyme digestion and immunocapture Bioanalysis 2016 8 847 56 https://doi.org/10.4155/bio.16.24
Schuster O, Atiya-Nasagi Y, Rosen O, Zvi A, Glinert I, Shmuel AB, Coupling immuno-magnetic capture with LC-MS/MS(MRM) as a sensitive, reliable, and specific assay for SARS-CoV-2 identification from clinical samples Anal Bioanal Chem 2022 414 1949 62 https://doi.org/10.1007/s00216-021-03831-5
Pierce CL, Williams TL, Santana WI, Levine M, Chen LM, Cooper HC, Immunocapture isotope dilution mass spectrometry in response to a pandemic influenza threat Vaccine 2017 35 5011 8 https://doi.org/10.1016/j.vaccine.2017.07.049
Sleumer B, Van Faassen M, Vos MJ, Bischoff R, Kema IP, van de Merbel NC, Selective quantification of the 22-kDa isoform of human growth hormone 1 in serum and plasma by immunocapture and LC-MS/MS Anal Bioanal Chem 2022 414 6187 200 https://doi.org/10.1007/s00216-022-04188-z
Huang X, Xu X, Partridge MA, Chen J, Koehler-Stec E, Sumner G, Isotyping and semi-quantitation of monkey anti-drug antibodies by immunocapture liquid chromatography-mass spectrometry AAPS J 2021 23 1 11 https://doi.org/10.1208/s12248-020-00538-w
Zhao Y, Gu H, Postelnek J, DeMichele M, Yuan L, Zhang YJ, Fit-for-purpose protein biomarker assay validation strategies using hybrid immunocapture-liquid chromatography-tandem-mass spectrometry platform: quantitative analysis of total soluble cluster of differentiation 73 Anal Chim Acta 2020 1126 144 53 https://doi.org/10.1016/j.aca.2020.06.023
Whiteaker JR, Zhao L, Zhang HY, Feng LC, Piening BD, Anderson L, Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers Anal Biochem 2007 362 44 54 https://doi.org/10.1016/j.ab.2006.12.023
Duggan J, Ren B, Mao Y, Chen LZ, Philip E, LC-MS quantification of protein drugs: validating protein LC-MS methods with predigestion immunocapture Bioanalysis 2016 8 1951 64 https://doi.org/10.4155/bio-2016-0137
Winther B, Nordlund M, Paus E, Reubsaet L, Halvorsen TG, Immuno-capture as ultimate sample cleanup in LC-MS/MS determination of the early stage biomarker ProGRP J Separ Sci 2009 32 2937 43 https://doi.org/10.1002/jssc.200900233
Kushnir MM, Rockwood AL, Strathmann FG, Frank EL, Straseski JA, Meikle AW, LC-MS/MS measurement of parathyroid hormone-related peptide Clin Chem 2016 62 218 26 https://doi.org/10.1373/clinchem.2015.244012
Kumar V, Barnidge DR, Chen LS, Twentyman JM, Cradic KW, Grebe SK, Quantification of serum 1-84 parathyroid hormone in patients with hyperparathyroidism by immunocapture in situ digestion liquid chromatography-tandem mass spectrometry Clin Chem 2010 56 306 13 https://doi.org/10.1373/clinchem.2009.134643
Stoll DR, Carr PW, Two-dimensional liquid chromatography: a state of the art tutorial Anal Chem 2017 89 519 31 https://doi.org/10.1021/acs.analchem.6b03506
Levernæs MCS, Broughton MN, Reubsaet L, Halvorsen TG, To elute or not to elute in immunocapture bottom-up LC-MS J Chromatogr B Anal Technol Biomed Life Sci 2017 1055-1056 51 60 https://doi.org/10.1016/j.jchromb.2017.03.044
Zheng N, Taylor K, Gu H, Santockyte R, Wang XT, McCarty J, Antipeptide immunocapture with in-sample calibration curve strategy for sensitive and robust LC-MS/MS bioanalysis of clinical protein biomarkers in formalin-fixed paraffin-embedded tumor tissues Anal Chem 2020 92 14713 22 https://doi.org/10.1021/acs.analchem.0c03271
Berg D, Malinowsky K, Reischauer B, Wolff C, Becker KF, Use of formalin-fixed and paraffin-embedded tissues for diagnosis and therapy in routine clinical settings Methods Mol Biol 2011 785 109 22 https://doi.org/10.1007/978-1-61779-286-1_8
Escobar H, Kushnir MM, Ray JA, Merrell MA, Gomez G, Fietkau R, Measurement of pancreatic polypeptide and its peptide variant in human serum and plasma by immunocapture-liquid-chromatography-tandem mass spectrometry ref intervals pract assay considerations Biochem Physiol 2014 3 140
Ulmer C, Kritmetapak K, Singh R, Vesper H, Kumar R, High-resolution mass spectrometry for the measurement of PTH and PTH fragments: insights into PTH physiology and bioactivity J Am Soc Nephrol 2022 38 1448 58 https://doi.org/10.1681/asn.2022010036
Kritmetapak K, Losbanos LA, Hines JM, O'Grady KL, Ulmer CZ, Vesper HW, Chemical characterization and quantification of circulating intact PTH and PTH fragments by high-resolution mass spectrometry in chronic renal failure Clin Chem 2021 67 843 53 https://doi.org/10.1093/clinchem/hvab013
Budelier MM, He Y, Barthelemy NR, Jiang H, Li Y, Park E, A map of neurofilament light chain species in brain and cerebrospinal fluid and alterations in Alzheimer's disease Brain Commun 2022 4 fcac045 https://doi.org/10.1093/braincomms/fcac045
Liu H, Zhang N, Wan D, Cui M, Liu Z, Liu S, Mass spectrometry-based analysis of glycoproteins and its clinical applications in cancer biomarker discovery Clin Proteonomics 2014 11 1 9 https://doi.org/10.1186/1559-0275-11-14
Chen R, Tan Y, Wang M, Wang F, Yao Z, Dong L, Development of glycoprotein capture-based label-free method for the high-throughput screening of differential glycoproteins in hepatocellular carcinoma Mol Cell Proteomics 2011 10 M110.006445 https://doi.org/10.1074/mcp.m110.006445
DelGuidice CE, Ismaiel OA, Mylott WR, Yuan M, Halquist MS, Intact quantitative bioanalytical method development and fit-for-purpose validation of a monoclonal antibody and its related fab fragment in human vitreous and aqueous humor using LC-HRMS Anal Bioanal Chem 2022 414 4189 202 https://doi.org/10.1007/s00216-022-04071-x
Jin W, Burton L, Moore I, LC-HRMS quantitation of intact antibody drug conjugate trastuzumab emtansine from rat plasma Bioanalysis 2018 10 851 62 https://doi.org/10.4155/bio-2018-0003
Ravela S, Valmu L, Domanskyy M, Koistinen H, Kylänpää L, Lindström O, An immunocapture-LC-MS-based assay for serum SPINK1 allows simultaneous quantification and detection of SPINK1 variants Anal Bioanal Chem 2018 410 1679 88 https://doi.org/10.1007/s00216-017-0803-y
Thibault P, Perreault C, Immunopeptidomics: reading the immune signal that defines self from nonself Mol Cell Proteomics 2022 21 100234 https://doi.org/10.1016/j.mcpro.2022.100234
Chong C, Coukos G, Bassani-Sternberg M, Identification of tumor antigens with immunopeptidomics Nat Biotechnol 2021 40 175 88 https://doi.org/10.1038/s41587-021-01038-8
Kovalchik KA, Wessling L, Saab F, Ma Q, Despault J, Kubiniok P, Immunopeptidomics for dummies: detailed experimental protocols and rapid, user-friendly visualization of MHC I and II ligand datasets with MhcVizPipe bioRxiv 2020 2020.11.02.360958
Xin L, Qiao R, Chen X, Tran H, Pan S, Rabinoviz S, A streamlined platform for analyzing tera-scale DDA and DIA mass spectrometry data enables highly sensitive immunopeptidomics Nat Commun 2022 13 1 9 https://doi.org/10.1038/s41467-022-30867-7
Zhao Y, Liu G, Yuan X, Gan J, Peterson JE, Shen JX, Strategy for the quantitation of a protein conjugate via hybrid immunocapture-liquid chromatography with sequential HRMS and SRM-based LC-MS/MS analyses Anal Chem 2017 89 5144 51 https://doi.org/10.1021/acs.analchem.7b00926
Dong M, New HPLC, MS, and CDS products introduced in 2021-2022: a brief review LCGC North Am 2022 40 165-8, 170-3 https://doi.org/10.56530/lcgc.na.jw6767l7
Sugimoto H, Wei D, Dong L, Ghosh D, Chen S, Qian MG, Perspectives on potentiating immunocapture-LC-MS for the bioanalysis of biotherapeutics and biomarkers Bioanalysis 2018 10 1679 90 https://doi.org/10.4155/bio-2018-0205
Kellie JF, Kehler JR, Mencken TJ, Snell RJ, Hottenstein CS, A whole-molecule immunocapture LC-MS approach for the in vivo quantitation of biotherapeutics Bioanalysis 2016 8 2103 14 https://doi.org/10.4155/bio-2016-0180
Millet A, Khoudour N, Lebert D, Machon C, Terrier B, Blanchet B, Development, validation, and comparison of two mass spectrometry methods (LC-MS/HRMS and LC-MS/MS) for the quantification of rituximab in human plasma Molecules 2021 26 1383 https://doi.org/10.3390/molecules26051383
Zubarev RA, Makarov A, Orbitrap mass spectrometry Anal Chem 2013 85 5288 96 https://doi.org/10.1021/ac4001223
Jian W, Kang L, Burton L, Weng N, A workflow for absolute quantitation of large therapeutic proteins in biological samples at intact level using LC-HRMS Bioanalysis 2016 8 1679 91 https://doi.org/10.4155/bio-2016-0096
Kellie JF., Intact protein LC-MS for pharmacokinetics Int J Pharmacokinet 2020 4 IPK05 https://doi.org/104155/ipk-2020-0004
Muccio S, Tavernier A, Rouchon MC, Roccon A, Dai S, Finn G, Validated method based on immunocapture and liquid chromatography coupled to high-resolution mass spectrometry to eliminate isatuximab interference with M-protein measurement in serum Anal Chem 2021 93 15236 42 https://doi.org/10.1021/acs.analchem.1c03410
Finn G, Macé S, Campana F, Le-Guennec S, Muccio S, Tavernier A, Evaluating Isatuximab interference with monoclonal protein detection by immuno-capture and liquid chromatography coupled to high resolution mass spectrometry in the pivotal phase 3 multiple myeloma trial, icaria-MM Blood 2019 134 1 Suppl 3143 https://doi.org/10.1182/blood-2019-129963
Himmelsbach M, 10 years of MS instrumental developments-impact on LC-MS/MS in clinical chemistry J Chromatogr B 2012 883-884 3 17 https://doi.org/10.1016/j.jchromb.2011.11.038
Ramanathan R, Jemal M, Ramagiri S, Xia YQ, Humpreys WG, Olah T, It is time for a paradigm shift in drug discovery bioanalysis: from SRM to HRMS J Mass Spectrom 2011 46 595 601 https://doi.org/10.1002/jms.1921
Pang Z, Zhou G, Ewald J, Chang L, Hacariz O, Basu N, Using MetaboAnalyst 5.0 for LC-HRMS spectra processing, multi-omics integration and covariate adjustment of global metabolomics data Nat Protoc 2022 17 1735 61 https://doi.org/10.1038/s41596-022-00710-w
Gutknecht MF, Kaku H, Rothstein TL, Microparticle immunocapture assay for quantitation of protein multimer amount and size Cell Rep Methods 2022 2 100214 https://doi.org/10.1016/j.crmeth.2022.100214
Bults P, Sonesson A, Knutsson M, Bischoff R, van de Merbel NC, Intact protein quantification in biological samples by liquid chromatography-high-resolution mass spectrometry: somatropin in rat plasma J Chromatogr B Anal Technol Biomed Life Sci 2020 15 1144 https://doi.org/10.1016/j.jchromb.2020.122079
Wang L, Dodge RW, Ji QC, The future of immunocapture-capillary electrophoresis-high resolution mass spectrometry Bioanalysis 2017 9 1627 31 https://doi.org/10.4155/bio-2017-4977